Additional Reads in December 2023
December 22, 2023Further commentaries, articles and blog posts worth reading:Zen und die Kunst, Forschung zu bewerten (in German) In defense of quantitative metrics…
Read MoreEffects of ketamine optical isomers, fluoxetine and naloxone on timing in differential reinforcement of low-rate response (DRL) 72-s task in rats
December 22, 2023This is one of the first publications reporting the results of original research performed in an EQIPD-certified laboratory. This study was…
Read MoreSystematic assessment of the replicability and generalizability of preclinical findings: Impact of protocol harmonization across laboratory sites
December 22, 2023The influence of protocol standardization between laboratories on their replicability of preclinical results has not been addressed in a systematic way….
Read MoreSex as a biological variable in preclinical research: Unforeseen and abused degree of freedom
December 21, 2023In many fields of biomedical research, in vivo studies traditionally involved the use of male subjects. The situation recently started to…
Read MoreADDITIONAL READS NOVEMBER 2022
November 2, 2022Further commentaries, articles and blog posts worth reading: Without appropriate metadata, data-sharing mandates are pointless Research funders and the promotion of…
Read MoreObserving Many Researchers Using the Same Data and Hypothesis Reveals a Hidden Universe of Uncertainty
November 2, 2022Most discussions of reliability problems in science focus on systematic biases. In this article, Nate Breznau and colleagues broaden the lens…
Read MoreAI-enabled image fraud in scientific publications
November 2, 2022Destroying image integrity in scientific papers may result in serious consequences. Inappropriate duplication and fabrication of images are two common misconducts…
Read MoreCitation counts and journal impact factors do not capture some indicators of research quality in the behavioural and brain sciences
November 2, 2022Citation data and journal impact factors are important components of faculty dossiers and figure prominently in both promotion decisions and assessments…
Read MoreMany researchers were not compliant with their published data sharing statement: mixed-methods study
November 2, 2022The objective of the study was to analyze researchers’ compliance with their data availability statement (DAS) from manuscripts published in open-access…
Read MorePlea for a Simple But Radical Change in Scientific Publication: To Improve Openness, Reliability, and Reproducibility, Let’s Deposit and Validate Our Results before Writing Articles
November 2, 2022In this article, Jean-Antoine Girault proposed a simple change in the way scientists publish their findings to improve reliability and reproducibility…
Read MoreThe EQIPD Framework
September 6, 2022The EQIPD framework for rigor in the design, conduct, analysis, and documentation of animal experiments was published today. It defines the demands for…
Read MoreAdditional reads in June 2022
June 16, 2022European Journal of Behavior Analysis: women, men, and authorship Are there any good experiments that should not be done? ‘Robot scientist’…
Read MoreConsiderations for implementing electronic laboratory notebooks in an academic research environment
June 16, 2022Stuart Higgins and colleagues describe in this review article the use of electronic laboratory notebooks (ELN) from different perspectives. First, they…
Read MoreMany researchers were not compliant with their published data sharing statement: mixed-methods stud
June 16, 2022In this article, the authors analysed researchers’ compliance with their Data Availability Statement (DAS) from manuscripts published in open access journals…
Read MoreBlind spots on western blots: a meta-research study highlighting opportunities to improve figures and methods reporting
June 16, 2022Western blotting is a standard laboratory method used to detect proteins and assess their expression levels. Unfortunately, poor western blot image…
Read MoreDo multiple experimenters improve the reproducibility of animal studies?
June 16, 2022In light of the reproducibility crisis, there is a growing awareness that the rigorous standardization of experimental conditions may contribute to…
Read MoreTesting the reproducibility and robustness of the cancer biology literature by robot
June 16, 2022Scientific results should be reproducible and robust. However, when reproducibility is tested, it is often not found (often termed ’reproducibility crisis’),…
Read MoreWhat has preclinical systematic review ever done for us?
June 16, 2022Systematic reviews and meta-analyses deliver a crystallized understanding of the existing research data in any given space. However, grappling with the…
Read MoreReanalysis: the forgotten sibling of reproducibility and replicability
June 16, 2022Ensuring reproducibility and replicability has been an issue in many scientific disciplines in the past decade. In this commentary, Matthew Faria…
Read MorePreregistration of animal research protocols: development and 3-year overview of preclinicaltrials.eu
June 16, 2022Although commonly acknowledged and applied in clinical research since 2000, preregistration of animal studies is not yet the norm. In 2018…
Read MoreBringing microscopy images to the next level
June 16, 2022In this Nature Methods issue, the global microscopy community presented comprehensive efforts to improve reporting and reproducibility of microscopy images. Articles…
Read MoreAdditional reads in March 2022
March 14, 2022The new normal? Redaction bias in biomedical science Why Discovering ‘Nothing’ in Science Can Be So Incredibly Important New Frontiers research…
Read MoreThe impact of methodology on the reproducibility and rigor of DNA methylation data
March 14, 2022Research focusing on epigenetic modifications is a growing field in the neuroscience area. However, issues related to data reproducibility across laboratories…
Read MoreThe past, present and future of Registered Reports
March 14, 2022Registered Reports are a form of publication in which study proposals are peer reviewed and pre-accepted before research is undertaken. By deciding which…
Read MoreExternal validity in translational biomedicine: understanding the conditions enabling the cause to have an effect
March 14, 2022A spectre is haunting biomedical research: It appears that a substantial fraction of published research results cannot be reproduced, while spectacularly…
Read MoreAdditional Reads in December 2021
December 20, 2021Want research integrity? Stop the blame game Einstein Foundation Award 2021 Understand the real reasons reproducibility reform fails Five keys to…
Read MoreNonreplicable publications are cited more than replicable ones
December 20, 2021In this article, Marta Serra-Garcia and Uri Gneezy used publicly available data to show that published papers in top psychology, economics,…
Read MoreInvestigating the replicability of preclinical cancer biology
December 20, 2021Replicability is an important feature of scientific research. Thus, the Reproducibility Project: Cancer Biology was set up to provide evidence about…
Read MoreMisidentified biomedical resources: Journal guidelines are not a quick fix
December 20, 2021Some journals have implemented guidelines regarding the use and reporting of cell lines, antibodies, and laboratory animals to improve the value…
Read MorePre-Clinical Common Data Elements for Traumatic Brain Injury Research: Progress and Use Cases
December 20, 2021Traumatic brain injury (TBI) is an extremely complex condition due to heterogeneity in injury mechanism, underlying conditions, and secondary injury. Pre-clinical…
Read MoreThe past, present and future of Registered Reports
December 20, 2021Registered Reports are a form of empirical publication in which study proposals are peer reviewed and pre-accepted before research is undertaken….
Read MoreAdditional Reads in November 2021
November 3, 2021Science Forum: A community-led initiative for training in reproducible research Reproducibility: expect less of the scientific paper Share methods through visual…
Read MoreMethodology over metrics: current scientific standards are a disservice to patients and society
November 3, 2021Although the issues related to poor quality of medical research are well known, the research community fails to properly address them….
Read MoreToward Standardized Guidelines for Investigating Neural Circuit Control of Behavior in Animal Research
November 3, 2021With the advent of tools for recording and manipulating activity with high spatiotemporal resolution in defined neural circuits in behaving animals,…
Read MoreInitial evidence of research quality of registered reports compared with the standard publishing model
November 3, 2021In registered reports (RRs), initial peer review and in-principle acceptance occur before knowing the research outcomes. This combats publication bias and…
Read MoreTechnological advances in preclinical meta-research
November 3, 2021Preclinical systematic reviews are vital; they serve many purposes by assessing the range and quality of the evidence. Through these reviews…
Read MoreeLabFTW as an Open Science tool to improve the quality and translation of preclinical research
November 3, 2021Together with the group of Ulf Kahlert from the University of Düsseldorf, PAASP’s Björn Gerlach published an article in F1000Research on…
Read MoreAdditional reads in June 2021
June 16, 2021Nonreplicable publications are cited more than replicable ones Good research begins long before papers get written Why indirect contributions matter for…
Read MorePutting the Self in Self-Correction: Findings from the Loss-of-Confidence Project
June 16, 2021Science is often perceived to be a self-correcting enterprise. In principle, the assessment of scientific claims is supposed to proceed in…
Read MoreCreating clear and informative image-based figures for scientific publications
June 16, 2021Scientists routinely use images to display data and images are a critical part of a scientific report or publication.However, many resources…
Read MoreWhat is the optimum design for my animal experiment?
June 16, 2021Within preclinical research, attention has focused on experimental design and how current practices can lead to poor reproducibility. There are numerous…
Read MoreMeta-analysis of variation suggests that embracing variability improves both replicability and generalizability in preclinical research
June 16, 2021The long-held belief that experimental standardization begets replicability has recently been challenged – based on the observation that the reduction of…
Read MoreThe MDAR Framework – a new tool for life sciences reporting
June 16, 2021Incomplete or imprecise reporting of life sciences research contributes to challenges with reproducibility, replicability, and biomedical applications. For the last three…
Read MoreEQIPD Quality System published
June 16, 2021The manuscript “Introduction to the EQIPD quality system” was recently accepted by and published in eLife. This publication marks an important milestone…
Read MoreAdditional reads in March 2021
March 30, 2021Science Forum: Improving preclinical studies through replications Assessment of transparency indicators across the biomedical literature: How open is open? Von Botswana…
Read MoreReactivation-dependent amnesia for contextual fear memories: Evidence for publication bias
March 30, 2021Research on memory reconsolidation has been booming in the last two decades, with numerous high-impact publications reporting promising amnestic interventions in…
Read MoreTaking a fresh look at FAIR for research software
March 30, 2021Software is increasingly essential in most research, and much of this software is developed specifically for and during research. To make this…
Read MoreAdvancing science or advancing careers? Researchers’ opinions on success indicators
March 30, 2021The way in which we assess researchers has been under the radar in the past few years. Critics argue that current…
Read MoreReproducible image handling and analysis
March 30, 2021Image data are universal in life sciences research. Their proper handling is not. A significant proportion of image data in research…
Read MoreAn excess of positive results: Comparing the standard Psychology literature with Registered Reports
March 30, 2021Selectively publishing ‘positive’ results distorts the available evidence for scientific claims. For the past decade, scientists from different fields have been…
Read MoreADDITIONAL READS IN DECEMBER 2020
December 18, 2020Collaboration on the road to better preclinical research Research integrity: nine ways to move from talk to walk Compliance Services for…
Read MoreHow often do leading biomedical journals use statistical experts to evaluate statistical methods? The results of a survey
December 18, 2020Scientific claims in biomedical research are typically derived from statistical analyses. However, misuse or misunderstanding of statistical procedures and results permeate…
Read MorePublication rate in preclinical research: a plea for preregistration
December 18, 2020In biomedical research, limitations in the design and reporting of experiments are known to cause avoidable waste of time and resources….
Read MoreUse of causal claims in observational studies: a research on research study
December 18, 2020Many researchers remain tempted to draw causal conclusions from observational data despite acknowledging that mere association is not causation because causal…
Read MoreCredibility of preprints: an interdisciplinary survey of researchers
December 18, 2020Preprints increase accessibility and can speed scholarly communication if researchers view them as credible enough to read and use. Preprint services…
Read MoreThe “replication crisis” in the public eye: Germans’ awareness and perceptions of the (ir)reproducibility of scientific research
December 18, 2020While 90% of scientists surveyed by Nature feel that there is a “reproducibility crisis” in science (Baker, 2016), and major media…
Read MoreNew publication co-authored by PAASP: Survey of Core Facilities shows the importance of communication and management for optimal research quality
December 18, 2020PAASP and the Interdisciplinary Neurobehavioral Core (INBC) at the University of Heidelberg aim to establish a quality framework for Core Facilities…
Read MorePAASP publication in Nature Reviews Drug Discovery: Improving target assessment in biomedical research – the GOT-IT recommendations
December 18, 2020The PAASP team has published an article in Nature Reviews Drug Discovery, together with research groups from the Fraunhofer IME-TMP and the…
Read MoreAdditional reads in October 2020
October 8, 2020When antibodies mislead: the quest for validation Von Maus zu Mensch durch das Tal des Todes (in German) Researchers’ Perceptions of…
Read MoreHow the COVID-19 pandemic highlights the necessity of animal research
October 8, 2020Recently, a petition was offered to the European Commission calling for an immediate ban on animal testing. Although a Europe-wide moratorium…
Read MoreTen simple rules on how to write a standard operating procedure
October 8, 2020The long-term accessibility of research data is fundamental in the economy of the research production process. However, the availability of data…
Read MoreReproducibility in systems biology modelling
October 8, 2020The reproducibility crisis has emerged as an important concern across many fields of science. Systems biology modelling, which involves mathematical representation…
Read MorePAASP Editorial in the Journal Temperature
October 8, 2020Please following this LINK to our Editorial “Enhancing quality in preclinical data: Of hot science and cool quality”, which was just published in…
Read MoreReproducibility in systems biology modelling
August 25, 2020A recent report by Tiwari et al. investigated the reproducibility rate in systems biology modelling by reproducing the mathematical representation of 455 kinetic…
Read MoreRisk‐of‐bias VISualization (robvis): An R package and Shiny web app for visualizing risk‐of‐bias assessments
August 17, 2020There is currently no generic tool for producing figures to display and explore the risk‐of‐bias assessments that routinely take place as…
Read MoreAdditional reads in August 2020
August 17, 2020Five better ways to assess science $48 Billion Is Lost to Avoidable Experiment Expenditure Every Year Opinion: Surgisphere Fiasco Highlights Need…
Read MoreChoice of y-axis can mislead readers
August 17, 2020Biases at the level of study design, conduct, data analysis and reporting have been recognized as major contributing factors to poor…
Read MoreUsing Bayes factor hypothesis testing in neuroscience to establish evidence of absence
August 17, 2020For neuroscience and brain research to progress, it is critical to differentiate between experimental manipulations which have no effect and those…
Read MoreAdvancing science or advancing careers? Researchers’ opinions on success indicators
August 17, 2020The way in which we assess researchers has been under the radar in the past few years. Critics argue that current…
Read MoreAcademic criteria for promotion and tenure in biomedical sciences faculties: cross-sectional analysis of international sample of universities
August 17, 2020Understanding the variability of criteria and thresholds for promotion and tenure applied across institutions requires a systematic empirical assessment. Therefore, the…
Read MoreReproducibility of animal research in light of biological variation
August 17, 2020Context-dependent biological variation presents a unique challenge to the reproducibility of results in experimental animal research, because organisms’ responses to experimental…
Read MoreAdditional reads in May 2020
May 28, 2020SuperPlots: Communicating reproducibility and variability in cell biology Against pandemic research exceptionalism Pseudoscience and COVID-19 — we’ve had enough already Spin…
Read MoreOctopus: The primary research record
May 28, 2020Created in partnership with the UK Reproducibility Network, the Octopus platform is free to use and publishes all kinds of scientific…
Read MoreUsing Microsoft OneNote as an ELN
May 28, 2020Electronic research data documentation can be achieved with either comprehensive software applications or “do-it-yourself” solutions. Whereas the first is often quite…
Read MorePLOS launches research data survey
May 28, 2020PLOS has launched a major survey targeting researchers in North America and Europe: The goal is to deepen the understanding of…
Read MoreDie Reproduzierbarkeitskrise: Bedrohung oder Chance für die Wissenschaft? (In German)
May 28, 2020In this Editorial, published in Biologie in unserer Zeit, Martin C. Michel and Ralf Dahm discuss threats and opportunities related to…
Read MoreSystematic review of guidelines for internal validity in the design, conduct and analysis of preclinical biomedical experiments involving laboratory animals
May 28, 2020Several initiatives have set out to increase transparency and internal validity of preclinical studies. While many of the points raised in…
Read MoreVariability in the analysis of a single neuroimaging dataset by many teams
May 28, 2020To test the reproducibility and robustness of results obtained in the neuroimaging field, 70 independent teams of neuroimaging experts from across…
Read MoreCommentary March 2020
March 31, 2020Comment on Walsh et al. “The statistical significance of randomized controlled trial results is frequently fragile: a case for a Fragility…
Read MoreAdditional reads in March 2020
March 31, 2020Preregistration of exploratory research: Learning from the golden age of discovery What Research Institutions Can Do to Foster Research Integrity When…
Read MoreComparing quality of reporting between preprints and peer-reviewed articles in the biomedical literature
March 31, 2020Preprint usage is growing rapidly in the life sciences; however, questions remain on the relative quality of preprints when compared to…
Read MoreResearch Culture: Framework for advancing rigorous research
March 31, 2020There is a pressing need to increase the rigor of research in the life and biomedical sciences. To address this issue,…
Read MoreImproving the trustworthiness, usefulness, and ethics of biomedical research through an innovative and comprehensive institutional initiative
March 31, 2020The reproducibility crisis triggered worldwide initiatives to improve rigor, reproducibility, and transparency in biomedical research. There are many examples of scientists,…
Read MoreResearch Culture and Reproducibility
March 31, 2020There is an ongoing debate regarding the robustness and credibility of published scientific research. In this article, the authors argue that…
Read MoreNo raw data, no science: another possible source of the reproducibility crisis
March 31, 2020Inappropriate practices of science, such as HARKing, p-hacking, and selective reporting of positive results, have been suggested as causes of irreproducibility….
Read MoreCoronavirus: The need for solid, robust data
March 31, 2020Like everyone else we are with a great concern given the current coronavirus situation and the beginning of a global experiment:…
Read MoreAdditional READS in January 2020
February 1, 2020Measuring Transparency and Reproducibility of Biomedical Articles Causal claims about correlations reduced in press releases following academic study of health news…
Read MoreIs N-Hacking Ever OK? A simulation-based study
February 1, 2020After an experiment has been completed and analyzed, a trend may be observed that is “not quite significant”. Sometimes in this…
Read MorePublishers’ Responsibilities in Promoting Data Quality and Reproducibility
February 1, 2020Scholarly publishers can help to increase data quality and reproducible research by promoting transparency and openness. Increasing transparency can be achieved…
Read MoreRigor and Transparency Index, a new metric of quality for assessing biological and medical science methods.
February 1, 2020The reproducibility crisis in science is a multifaceted problem involving practices and incentives, both in the laboratory and in publication.Using SciScore,…
Read MoreNew Author Guidelines for Displaying Data and Reporting Data Analysis and Statistical Methods in Experimental Biology
February 1, 2020To improve the robustness and transparency of scientific reporting, the American Society for Pharmacology and Experimental Therapeutics (ASPET), with input from PAASP’s Martin…
Read MoreADDITIONAL READS December 2019
December 18, 2019Why scientists need to be better at data visualization Statistical significance gives bias a free pass Petitions in scientific argumentation: Dissecting…
Read MoreA consensus-based transparency checklist
December 18, 2019Transparency of research processes is required not only for evaluating and reproducing results, but also for research synthesis and meta-analysis from…
Read MorePublication rates in animal research. Extent and characteristics of published and non-published animal studies followed up at two German university medical centres
December 18, 2019Non-publication and publication bias in animal research are prominent topics in current debates on the “reproducibility crisis” and “failure rates in…
Read MoreBe positive about negatives – recommendations for the publication of negative (or null) results.
December 18, 2019PAASP’s Anton Bespalov together with Phil Skolnick (Opiant) and Thomas Steckler (Janssen) address the issue of negative data being rarely disclosed…
Read MoreAdditional reads November 2019
November 22, 2019Fixing the Flaws in Animal Research No Crisis but No Time for Complacency Licence to publish will restore trust in science…
Read MoreOff-target toxicity is a common mechanism of action of cancer drugs undergoing clinical trials
November 22, 2019Use of high-quality tools is an essential element of Good Research Practice. Like for many other aspects, “high quality” is a…
Read MoreReproducible and Transparent Research Practices in Published Neurology Research
November 22, 2019The objective of this study by Rauh et al. was to evaluate the nature and extent of reproducible and transparent research…
Read MoreFour erroneous beliefs thwarting more trustworthy research
November 22, 2019A range of problems currently undermines public trust in biomedical research. In this article, Mark Yarborough and colleagues discuss four erroneous…
Read MoreLaboratory mice born to wild mice have natural microbiota and model human immune responses
November 22, 2019Mice can be a valuable model for early biomedical research, but many of the drugs that demonstrate promising results in these…
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